Species Publications

Publication details

De novo annotation of the immune-enriched transcriptome provides insights into immune system genes of Chinese sturgeon (Acipenser sinensis). (2016) Fish Shellfish Immunol 55, 699-716.
Zhu R, Du HJ, Li SY, Li YD, Ni H, Yu XJ, Yang YY, Fan YD, Jiang N, Zeng LB, Wang XG
Abstract: Chinese sturgeon (Acipenser sinensis), one of the oldest extant actinopterygian fishes with very high evolutionary, economical and conservation interest, is considered to be one of the critically endangered aquatic animals in China. Up to date, the immune system of this species remains largely undetermined with little sequence information publicly available. Herein, the first comprehensive transcriptome of immune tissues for Chinese sturgeon was characterized using Illumina deep sequencing. Over 67 million high-quality reads were generated and de novo assembled into the final set of 91,739 unique sequences. The annotation pipeline revealed that 25,871 unigenes were successfully annotated in the public databases, of which only 2002 had significant match to the existing sequences for the genus Acipenser. Overall 22,827 unigenes were categorized into 52 GO terms, 12,742 were classified into 26 KOG categories, and 4968 were assigned to 339 KEGG pathways. A more detailed annotation search showed the presence of a notable representation of immune-related genes, which suggests that this non-teleost actinopterygian fish harbors the same intermediates as in the well known immune pathways from mammals and teleosts, such as pattern recognition receptor (PRR) signaling pathway, JAK-STAT signaling pathway, complement and coagulation pathway, T-cell receptor (TCR) and B-cell receptor (BCR) signaling pathways. Additional genetic marker discovery led to the retrieval of 20,056 simple sequence repeats (SSRs) and 327,140 single nucleotide polymorphisms (SNPs). This immune-enriched transcriptome of Chinese sturgeon represents a rich resource that adds to the currently nascent field of chondrostean fish immunogenetics and furthers the conservation and management of this valuable fish.

Acipenser sinensis

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Acipenserinae | Acipenserini | Acipenser ]

Acipenser_sinensis Picture Source
Taxonomy:Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Deuterostomia | Chordata | Craniata | Vertebrata | Gnathostomata | Teleostomi | Euteleostomi | Actinopterygii | Actinopteri | Chondrostei | Acipenseriformes | Acipenseroidei | Acipenseridae | Acipenserinae | Acipenserini | Acipenser
Common:Chinese sturgeon (German: Chinesischer Stör)
Ncbi Go to NCBI Taxonomy (61970)
Eol Encyclopedia of life
Wiki Wikipedia
Projects:
Rna_part International TSA Sequencing Consortium International TSA Sequencing Consortium: Acipenser sinensis TSA Sequencing Consortium
Rna_part National Center for Biotechnology Information

Genome files Show genomes


diArk 3.0 Content Info

Species:4870
References:153
Projects:7036
gen DNA Projects:3734
EST/cDNA Projects:849
Publications:1853
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

Facebook_grey
Twitter_grey
Googleplus_grey
2 Clicks for more privacy: You have to click the top icon to enable the Facebook Like, the Twitter, or the Google+ button.