Species

Drosophila simulans str. Mosaic Drosophila simulans (Species Group)

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]

Drosophila_simulans_str__Mosaic Picture Source
Taxonomy:Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Endopterygota | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup
Comment:The Release 1.0 D. simulans assembly represents a mosaic of several different D. simulans lines. The assembly process began with an ~4X WGS assembly of the the D. simulans w501 line. The w501 contigs were initially anchored, ordered and oriented by alignment with the D. melanogaster genome. The assembly was then examined for places where the w501 assembly suggested inversions with respect to the D. melanogaster assembly. One major inversion was found, confirming the already documented inversion found by Lemeunier and Ashburner (1976). Six other D. simulans lines (c167.4, md106ts, md199s, nc48s, sim4, and sim6) were assembled with ~1X coverage. Using the 4X WGS assembly of the simulans w501 genome as a scaffold, contigs and unplaced reads from the 1X assemblies of the other individual D. simulans lines were used to cover gaps in the w501 assembly where possible. Thus the resulting assembly is a mosaic containing the w501 contigs as the primary scaffolding, with contigs and unplaced reads from the other lines filling gaps in the w501 assembly.
Ncbi Go to NCBI Taxonomy (7240)
Eol Encyclopedia of life
Wiki Wikipedia
Publication:
et. al. Right (2007)
Nature 450, 203-218. Down

Genome files


National Center for Biotechnology Information National Center for Biotechnology Information
Type Version Date Compl Cov GC % Size (Mbp) Contigs CGR Illegal Chars N50 (kbp) Acc File Seq info
Chromosome v 1.0.0 2006-08-18 Dna_compl - 42.9 114.1 2790Info - 22036 Down Chromosome Comment
Unplaced chromosome v 1.0.0 2006-08-18 Dna_compl - 38.7 13.2 7215Info - 2 Down Chromosome Comment

The Genome Sequencing Center at Washington University The Genome Sequencing Center at Washington University
Type Version Date Compl Cov GC % Size (Mbp) Contigs CGR Illegal Chars N50 (kbp) Acc File Seq info
Chromosome v 1.0.0 2005-06-01 Dna_compl - 42.5 127.2 17Info - 22036 - License Comment

UCSC Genome Bioinformatics UCSC Genome Bioinformatics
Type Version Date Compl Cov GC % Size (Mbp) Contigs CGR Illegal Chars N50 (kbp) Acc File Seq info
Go The Genome Sequencing Center at Washington University Chromosome v 1.0.0

e! Ensembl e! Ensembl
Type Version Date Compl Cov GC % Size (Mbp) Contigs CGR Illegal Chars N50 (kbp) Acc File Seq info
Go The Genome Sequencing Center at Washington University Chromosome v 1.0.0

diArk 3.0 Content Info

Species:5699
References:167
Projects:8087
gen DNA Projects:4486
EST/cDNA Projects:849
Publications:2177
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

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