Species Publications

Publication details

Osmoadaptative Strategy and Its Molecular Signature in Obligately Halophilic Heterotrophic Protists. (2016) Genome Biol Evol 8, 2241-2258.
Harding T, Brown MW, Simpson AG, Roger AJ
Abstract: Halophilic microbes living in hypersaline environments must counteract the detrimental effects of low water activity and salt interference. Some halophilic prokaryotes equilibrate their intracellular osmotic strength with the extracellular milieu by importing inorganic solutes, mainly potassium. These "salt-in" organisms characteristically have proteins that are highly enriched with acidic and hydrophilic residues. In contrast, "salt-out" halophiles accumulate large amounts of organic solutes like amino acids, sugars and polyols, and lack a strong signature of halophilicity in the amino acid composition of cytoplasmic proteins. Studies to date have examined halophilic prokaryotes, yeasts, or algae, thus virtually nothing is known about the molecular adaptations of the other eukaryotic microbes, that is, heterotrophic protists (protozoa), that also thrive in hypersaline habitats. We conducted transcriptomic investigations to unravel the molecular adaptations of two obligately halophilic protists, Halocafeteria seosinensis and Pharyngomonas kirbyi Their predicted cytoplasmic proteomes showed increased hydrophilicity compared with marine protists. Furthermore, analysis of reconstructed ancestral sequences suggested that, relative to mesophiles, proteins in halophilic protists have undergone fewer substitutions from hydrophilic to hydrophobic residues since divergence from their closest relatives. These results suggest that these halophilic protists have a higher intracellular salt content than marine protists. However, absence of the acidic signature of salt-in microbes suggests that Haloc. seosinensis and P. kirbyi utilize organic osmolytes to maintain osmotic equilibrium. We detected increased expression of enzymes involved in synthesis and transport of organic osmolytes, namely hydroxyectoine and myo-inositol, at maximal salt concentration for growth in Haloc. seosinensis, suggesting possible candidates for these inferred organic osmolytes.

Pharyngomonas kirbyi

[cellular organisms | Eukaryota | Heterolobosea | Pharyngomonas]

Pharyngomonas_kirbyi Picture Source
Taxonomy:Eukaryota | Heterolobosea | Pharyngomonas
Synonym:Macropharyngomonas halophila, Heterolobosea sp. AGBS-2011
Ncbi Go to NCBI Taxonomy (63601)
Eol Encyclopedia of life
Wiki Wikipedia
Rna_part International TSA Sequencing Consortium International TSA Sequencing Consortium: Pharyngomonas kirbyi TSA Sequencing Consortium
Rna_part National Center for Biotechnology Information
et. al. Right (2016)
Genome Biol Evol 8, 2241-2258. Down

Genome files Show genomes

diArk 3.0 Content Info

gen DNA Projects:5158
EST/cDNA Projects:851
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

2 Clicks for more privacy: You have to click the top icon to enable the Facebook Like, the Twitter, or the Google+ button.