Species Publications

Publication details

De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish that Repeatedly Rejuvenates. (2016) Zoolog Sci 33, 366-371.
Hasegawa Y, Watanabe T, Takazawa M, Ohara O, Kubota S
Abstract: In most animals, aging is an irreversible process; however the species Turritopsis sp. has been observed to undergo a rejuvenation process as many as 14 times. In the present study, we used multiplexed RNA libraries to obtain the transcriptome from four developmental stages (St) of Turritopsis sp., including (I) immature medusa, (II) dumpling, (III) dumpling with a short stolon, and (IV) polyp, which had recently rejuvenated. A total of 4.02 billion paired-end reads were assembled de novo, yielding 90,327 contigs. Our analyses revealed that significant blast hits were recovered for 74% of the assembled contigs, and 19% were successfully annotated with gene ontology (GO) terms. A BLAST search demonstrated that 32% of the contigs were most similar to Hydra vulgarissequences. Raw reads from each sample were mapped against the contigs to find St-specific genes. This represents the first comprehensive set of de novo transcriptome data for this species, which may provide clues toward a better understanding of cyclical rejuvenation in multicellular animals.

Turritopsis sp. SK-2016

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Filifera | Oceaniidae | Turritopsis ]

Turritopsis_sp__SK_2016 Picture Source
Taxonomy:Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Cnidaria | Hydrozoa | Hydroidolina | Anthoathecata | Filifera | Oceaniidae | Turritopsis
Ncbi Go to NCBI Taxonomy (1784781)
Eol Encyclopedia of life
Wiki Wikipedia
Rna_part International TSA Sequencing Consortium International TSA Sequencing Consortium: Turritopsis sp. SK-2016 TSA Sequencing Consortium
Rna_part National Center for Biotechnology Information
et. al. Right (2016)
Zoolog Sci 33, 366-371. Down

Genome files Show genomes

diArk 3.0 Content Info

gen DNA Projects:5048
EST/cDNA Projects:851
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

2 Clicks for more privacy: You have to click the top icon to enable the Facebook Like, the Twitter, or the Google+ button.