[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
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| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
| Comment: | The Release 1.0 D. simulans assembly represents a mosaic of several different D. simulans lines. The assembly process began with an ~4X WGS assembly of the the D. simulans w501 line. The w501 contigs were initially anchored, ordered and oriented by alignment with the D. melanogaster genome. The assembly was then examined for places where the w501 assembly suggested inversions with respect to the D. melanogaster assembly. One major inversion was found, confirming the already documented inversion found by Lemeunier and Ashburner (1976). Six other D. simulans lines (c167.4, md106ts, md199s, nc48s, sim4, and sim6) were assembled with ~1X coverage. Using the 4X WGS assembly of the simulans w501 genome as a scaffold, contigs and unplaced reads from the 1X assemblies of the other individual D. simulans lines were used to cover gaps in the w501 assembly where possible. Thus the resulting assembly is a mosaic containing the w501 contigs as the primary scaffolding, with contigs and unplaced reads from the other lines filling gaps in the w501 assembly. |
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Go to NCBI Taxonomy (7240) |
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|  |
Encyclopedia of life |
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Wikipedia |
| Publication: |
Clark AG, Eisen MB, Smith DR et. al. 
( 2007)
Nature 450, 203-218.
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|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
| Comment: | This line is derived from flies collected in Kenya. It was inbred by sib-pair mating for seven generations by John Roote in the Ashburner lab, and an additional six generations at UC-Davis. |
|
|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publication: |
Clark AG, Eisen MB, Smith DR et. al.
( 2007)
Nature 450, 203-218.
|
|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
| Comment: | This line is derived from flies collected in Madagascar by Bill Ballard. It was inbred by sib-pair mating for five generations by Bill Ballard at Univ. of Iowa, and an additional five generations at UC-Davis. |
|
|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publication: |
Clark AG, Eisen MB, Smith DR et. al.
( 2007)
Nature 450, 203-218.
|
|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
|
|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publication: |
Clark AG, Eisen MB, Smith DR et. al.
( 2007)
Nature 450, 203-218.
|
|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
|
|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publication: |
Clark AG, Eisen MB, Smith DR et. al.
( 2007)
Nature 450, 203-218.
|
|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
|
|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publication: |
Clark AG, Eisen MB, Smith DR et. al.
( 2007)
Nature 450, 203-218.
|
|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
|
|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publication: |
Clark AG, Eisen MB, Smith DR et. al.
( 2007)
Nature 450, 203-218.
|
|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
| Comment: | This line is derived from flies collected in Kenya. It was inbred by sib-pair mating for seven generations by John Roote in the Ashburner lab, and an additional six generations at UC-Davis. |
|
|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publication: |
McManus CJ, Coolon JD, Eipper-Mains J et. al.
( 2014)
Genome Res 24, 786-796.
|
|
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Sophophora | melanogaster group | melanogaster subgroup ]
Picture Source
|
| Taxonomy: | Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Protostomia | Ecdysozoa | Panarthropoda | Arthropoda | Mandibulata | Pancrustacea | Hexapoda | Insecta | Dicondylia | Pterygota | Neoptera | Holometabola | Diptera | Brachycera | Muscomorpha | Eremoneura | Cyclorrhapha | Schizophora | Acalyptratae | Ephydroidea | Drosophilidae | Drosophilinae | Drosophilini | Drosophila | Sophophora | melanogaster group | melanogaster subgroup |
| Comment: | This line is derived from a white501 stock obtained from the Drosophila Species Stock Center in Bowling Green, OH in 1997. It was subsequently inbred by sib-pair mating for nine generations by Daniel Barbash at UC-Davis. The provenance of this line is poorly documented. However, it is likely derived from a Drosophila simulans stock collected in North America in the 1940's. |
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|
|
Go to NCBI Taxonomy (7240) |
|
|
| |
Encyclopedia of life |
|
| |
Wikipedia |
| Publications: |
Hu TT, Eisen MB, Thornton KR et. al.
( 2013)
Genome Res 23, 89-98.
Clark AG, Eisen MB, Smith DR et. al.
( 2007)
Nature 450, 203-218.
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|
Picture Source
