diArk | species

Species

diArk 3.0 Content

Rattus norvegicus

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus BN/Sprague-Dawley

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus BN/SsNHsdMCW

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus GK/Ox

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus SHRSP/Bbb

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus SS/JrNhsd

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus WKY/Bbb

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Muridae | Murinae | Rattus ]

Rattus norvegicus BN/Sprague-Dawley [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Muridae | Murinae | Rattus ]

Rattus norvegicus BN/SsNHsdMCW [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Muridae | Murinae | Rattus ]

Rattus norvegicus GK/Ox [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Muridae | Murinae | Rattus ]

Rattus norvegicus SHRSP/Bbb [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Muridae | Murinae | Rattus ]

Rattus norvegicus SS/JrNhsd [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Muridae | Murinae | Rattus ]

Rattus norvegicus WKY/Bbb [ Opisthokonta | Metazoa | Eumetazoa | . . . . . . | Muridae | Murinae | Rattus ]

Rattus norvegicus

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus BN/Sprague-Dawley

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus BN/SsNHsdMCW

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus GK/Ox

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus SHRSP/Bbb

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus SS/JrNhsd

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Rattus norvegicus WKY/Bbb

[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Muridae | Murinae | Rattus ]

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Genome files Show genomes

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amniota \| Mammalia \| Theria \| Eutheria \| Boreoeutheria \| Euarchontoglires \| Glires \| Rodentia \| Myomorpha \| Muroidea \| Muridae \| Murinae \| Rattus
Synonym:	Rattus rattiscus (misnomer), Gunn rats (misnomer)
Common:	brown rat, rat (German: Hausratte, Wanderratte)
		Go to NCBI Taxonomy (10116)
		Encyclopedia of life
		Wikipedia

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amniota \| Mammalia \| Theria \| Eutheria \| Boreoeutheria \| Euarchontoglires \| Glires \| Rodentia \| Myomorpha \| Muroidea \| Muridae \| Murinae \| Rattus
Synonym:	Rattus rattiscus (misnomer), Gunn rats (misnomer)
Common:	brown rat, rat (German: Hausratte, Wanderratte)
Comment:	This is the January 2003 combined whole genome shotgun assembly of Rattus norvegicus. It contains 29 million Brown Norway fragments sequenced by Celera and external sources and nearly eight million Celera-proprietary Sprague-Dawley sequence fragments. The assembly process relied on Celera's paired reads and BAC end reads from TIGR for long range order and orientation. Its scaffolds were mapped to chromosomes using STS maps.
		Go to NCBI Taxonomy (10116)
		Encyclopedia of life
		Wikipedia

Projects:
			National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project



			National Center for Biotechnology Information Reference Sequences: Rattus norvegicus (rat) genome view

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amniota \| Mammalia \| Theria \| Eutheria \| Boreoeutheria \| Euarchontoglires \| Glires \| Rodentia \| Myomorpha \| Muroidea \| Muridae \| Murinae \| Rattus
Synonym:	Rattus rattiscus (misnomer), Gunn rats (misnomer)
Common:	brown rat, rat (German: Hausratte, Wanderratte)
		Go to NCBI Taxonomy (10116)
		Encyclopedia of life
		Wikipedia

Projects:
			Bioinformatics Program, HMGC: Rat Genome Database



			e! Ensembl: Rat



			Human Genome Sequencing Center at Baylor College of Medicine: Rat Genome Project



			International TSA Sequencing Consortium: Rattus norvegicus BN/SsNHsdMCW TSA Sequencing Consortium



			National Center for Biotechnology Information: Rat Sequencing Project



			National Center for Biotechnology Information Reference Sequences: Rattus norvegicus (rat) genome view



			NCBI Mammalian Gene Collection: Rattus norvegicus



			The Gene Index Project: DFCI Rat (Rattus norvegicus) Gene Index



			UCSC Genome Bioinformatics: Rattus norvegicus Genome Browser Gateway

Publications:

Cortez D, Marin R, Toledo-Flores D et. al.

(2014)

Origins and functional evolution of Y chromosomes across mammals.

Nature 508, 488-493.

10.1038/nature13151

Lindblad-Toh K, Garber M, Zuk O et. al.

(2011)

A high-resolution map of human evolutionary constraint using 29 mammals.

Nature 478, 476-482.

10.1038/nature10530

Gerhard DS, Wagner L, Feingold EA et. al.

(2004)

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

Genome Res 14, 2121-7.

10.1101/gr.2596504

Show all 5 Publications Pub

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amniota \| Mammalia \| Theria \| Eutheria \| Boreoeutheria \| Euarchontoglires \| Glires \| Rodentia \| Myomorpha \| Muroidea \| Muridae \| Murinae \| Rattus
Synonym:	Rattus rattiscus (misnomer), Gunn rats (misnomer)
Common:	brown rat, rat (German: Hausratte, Wanderratte)
		Go to NCBI Taxonomy (10116)
		Encyclopedia of life
		Wikipedia

Publication:

Saar K, Beck A, Bihoreau MT et. al.

(2008)

SNP and haplotype mapping for genetic analysis in the rat.

Nat Genet 40, 560-566.

10.1038/ng.124

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amniota \| Mammalia \| Theria \| Eutheria \| Boreoeutheria \| Euarchontoglires \| Glires \| Rodentia \| Myomorpha \| Muroidea \| Muridae \| Murinae \| Rattus
Synonym:	Rattus rattiscus (misnomer), Gunn rats (misnomer)
Common:	brown rat, rat (German: Hausratte, Wanderratte)
		Go to NCBI Taxonomy (10116)
		Encyclopedia of life
		Wikipedia

Publication:

Saar K, Beck A, Bihoreau MT et. al.

(2008)

SNP and haplotype mapping for genetic analysis in the rat.

Nat Genet 40, 560-566.

10.1038/ng.124

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amniota \| Mammalia \| Theria \| Eutheria \| Boreoeutheria \| Euarchontoglires \| Glires \| Rodentia \| Myomorpha \| Muroidea \| Muridae \| Murinae \| Rattus
Synonym:	Rattus rattiscus (misnomer), Gunn rats (misnomer)
Common:	brown rat, rat (German: Hausratte, Wanderratte)
		Go to NCBI Taxonomy (10116)
		Encyclopedia of life
		Wikipedia

Publication:

Saar K, Beck A, Bihoreau MT et. al.

(2008)

SNP and haplotype mapping for genetic analysis in the rat.

Nat Genet 40, 560-566.

10.1038/ng.124

Picture Source

Taxonomy:	Eukaryota \| Opisthokonta \| Metazoa \| Eumetazoa \| Bilateria \| Deuterostomia \| Chordata \| Craniata \| Vertebrata \| Gnathostomata \| Teleostomi \| Euteleostomi \| Sarcopterygii \| Dipnotetrapodomorpha \| Tetrapoda \| Amniota \| Mammalia \| Theria \| Eutheria \| Boreoeutheria \| Euarchontoglires \| Glires \| Rodentia \| Myomorpha \| Muroidea \| Muridae \| Murinae \| Rattus
Synonym:	Rattus rattiscus (misnomer), Gunn rats (misnomer)
Common:	brown rat, rat (German: Hausratte, Wanderratte)
		Go to NCBI Taxonomy (10116)
		Encyclopedia of life
		Wikipedia

Publication:

Saar K, Beck A, Bihoreau MT et. al.

(2008)

SNP and haplotype mapping for genetic analysis in the rat.

Nat Genet 40, 560-566.

10.1038/ng.124

Species:	6488
References:	170
Projects:	9057
gen DNA Projects:	5222
EST/cDNA Projects:	851
Publications:	2417

National Center for Biotechnology Information: NCBI Eukaryotic Genomes Project