Canis lupus familiaris breed boxer
[ Opisthokonta | Metazoa | Eumetazoa | . . .
. . . | Canidae | Canis | Canis lupus ]
Picture Source
Taxonomy:
Eukaryota | Opisthokonta | Metazoa | Eumetazoa | Bilateria | Deuterostomia | Chordata | Craniata | Vertebrata | Gnathostomata | Teleostomi | Euteleostomi | Sarcopterygii | Dipnotetrapodomorpha | Tetrapoda | Amniota | Mammalia | Theria | Eutheria | Boreoeutheria | Laurasiatheria | Carnivora | Caniformia | Canidae | Canis | Canis lupus
Synonym:
Canis familiaris, Canis domesticus, Canis canis
Common:
domestic dog (German: Hund)
Comment:
The breed of dog that has been sequenced was the boxer because it is one of the breeds with the least amount of variation in its genome.
Go to NCBI Taxonomy (9615)
Encyclopedia of life
Wikipedia
Projects:
Broad Institute of Harvard and MIT: Dog Genome Sequencing Project
e! Ensembl: Dog
National Center for Biotechnology Information: Dog Sequencing Project
National Center for Biotechnology Information Reference Sequences: Dog Genome Resources
The Gene Index Project: DFCI Canis familiaris Gene Index
UCSC Genome Bioinformatics: Canis familiaris Genome Browser Gateway
Publications:
Lindblad-Toh K, Garber M, Zuk O
et. al.
(
2011
)
A high-resolution map of human evolutionary constraint using 29 mammals.
Nature
478
, 476-482.
10.1038/nature10530
Lindblad-Toh K, Wade CM, Mikkelsen TS
et. al.
(
2005
)
Genome sequence, comparative analysis and haplotype structure of the domestic dog.
Nature
438
, 803-19.
10.1038/nature04338
Genome files
Broad Institute of Harvard and MIT
Type
Version
Date
Compl
Cov
GC %
Size (Mbp)
Contigs
CGR
Illegal Chars
N50 (kbp)
Acc
File
Seq info
Chromosome
v 2.0.0
2005-05-31
7.6
41.3
2385.0
525
-
5000
-
Contigs
v 2.0.0
2005-05-31
7.6
41.3
2385.0
35696
-
179
-
National Center for Biotechnology Information
Type
Version
Date
Compl
Cov
GC %
Size (Mbp)
Contigs
CGR
Illegal Chars
N50 (kbp)
Acc
File
Seq info
Chromosome
v 3.0.0
2011-09-06
7x plus >90Mb finished sequence
41.1
2317.6
39
-
64190
Chromosome
v 2.0.0
2005-05-04
-
41.0
2309.9
39
-
66182
Contigs
v 3.0.0
2011-09-06
7x plus >90Mb finished sequence
41.3
2392.7
27105
-
267
Contigs
v 2.0.0
2005-05-04
-
41.3
2385.0
35696
-
179
Supercontigs
v 3.0.0
2011-09-06
7x plus >90Mb finished sequence
41.2
2368.6
1042
-
47698
Unplaced chromosome
v 2.0.0
2005-05-04
-
48.9
51.0
961
-
157
National Center for Biotechnology Information Reference Sequences
Type
Version
Date
Compl
Cov
GC %
Size (Mbp)
Contigs
CGR
Illegal Chars
N50 (kbp)
Acc
File
Seq info
Chromosome
v 2.0.0
2005-09-08
-
41.0
2309.9
39
-
66182
Mitochondrium
v 2.0.0
2005-09-08
-
39.7
0.0
1
-
16
Unplaced chromosome
v 2.0.0
2005-09-08
-
49.1
75.1
3227
-
64
UCSC Genome Bioinformatics
Type
Version
Date
Compl
Cov
GC %
Size (Mbp)
Contigs
CGR
Illegal Chars
N50 (kbp)
Acc
File
Seq info
Chromosome v 2.0.0
e! Ensembl
Type
Version
Date
Compl
Cov
GC %
Size (Mbp)
Contigs
CGR
Illegal Chars
N50 (kbp)
Acc
File
Seq info
Chromosome v 2.0.0