Welcome to diArk 3.0.

A database for eukaryotic genome and EST sequencing projects.


If you use diArk, please cite:
B. Hammesfahr, F. Odronitz, M. Hellkamp & M. Kollmar (2011) diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. BMC Research Notes 4, 338. Open Access Highly Accessed

Do you know?

Cryptococcus laurentii RY1
Cryptococcus_laurentii_RY1 Picture Source
Taxonomy:Eukaryota | Opisthokonta | Fungi | Dikarya | Basidiomycota | Agaricomycotina | Tremellomycetes | Tremellales | Rhynchogastremataceae | Papiliotrema
Ncbi Go to NCBI Taxonomy (5418)
Eol Encyclopedia of life
Wiki Wikipedia

Newest Species and Genome Assemblies in diArk

2018-10-15

Kluyveromyces_marxianus_LHW_O
Kluyveromyces marxianus LHW O v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetaceae | Kluyveromyces
Coverage: 812 | Contigs: 479 | GC-Content: 40.1% | Bases: 10.8Mbp | Filesize: 10.47MB
Komagataella_phaffii
Komagataella phaffii v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Phaffomycetaceae | Komagataella
Contigs: 33 | GC-Content: 41.1% | Bases: 9.3Mbp | Filesize: 9.05MB
Metschnikowia_bicuspidata_Baker2002
Metschnikowia bicuspidata Baker2002 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Metschnikowiaceae | Metschnikowia
Coverage: 100 | Contigs: 488 | GC-Content: 51.1% | Bases: 10.6Mbp | Filesize: 10.29MB
Metschnikowia_bicuspidata_Baker2002
Metschnikowia bicuspidata Baker2002 v.1.0.0 (supercontigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Metschnikowiaceae | Metschnikowia
Coverage: 100 | Contigs: 478 | GC-Content: 51.1% | Bases: 10.6Mbp | Filesize: 10.66MB

2018-10-12

Saccharomycodes_ludwigii_UTAD17
Saccharomycodes ludwigii UTAD17 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycodaceae | Saccharomycodes
Contigs: 1360 | GC-Content: 31.2% | Bases: 10.8Mbp | Filesize: 10.6MB
Yarrowia_lipolytica_NCIM_3589
Yarrowia lipolytica NCIM 3589 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Coverage: 140 | Contigs: 375 | GC-Content: 49.0% | Bases: 20.5Mbp | Filesize: 19.83MB
Yarrowia_lipolytica_NCIM_3590
Yarrowia lipolytica NCIM 3590 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Dipodascaceae | Yarrowia
Coverage: 600 | Contigs: 485 | GC-Content: 47.1% | Bases: 20.0Mbp | Filesize: 19.4MB

2018-04-20

Wickerhamiella_galacta_NRRL_Y_17645
Wickerhamiella galacta NRRL Y 17645 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Trichomonascaceae | Wickerhamiella
Coverage: 27.27 | Contigs: 2137 | GC-Content: 51.8% | Bases: 9.6Mbp | Filesize: 9.58MB

2018-04-09

Hanseniaspora_sp__NB_2018a_CRUB_1928
Hanseniaspora sp NB 2018a CRUB 1928 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycodaceae | Hanseniaspora
Coverage: 29.3 | Contigs: 338 | GC-Content: 37.1% | Bases: 10.1Mbp | Filesize: 9.88MB

2018-04-08

Zygosaccharomyces_kombuchaensis_CBS_8849
Zygosaccharomyces kombuchaensis CBS 8849 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetaceae | Zygosaccharomyces
Coverage: 23 | Contigs: 480 | GC-Content: 44.3% | Bases: 10.0Mbp | Filesize: 9.73MB

Newest Genome Publications in diArk

Wickerhamiella_galacta_NRRL_Y_17645
Candida_glabrata_FFUL887
Saccharomycopsis_fermentans_CBS_7830
Diutina_catenulata_WY3_10_4
Pichia_kudriavzevii_SJP_SNU

Purpose of the Database

The number of completed eukaryotic genome sequences and cDNA projects has increased exponentially in the past few years although most of them have not been published yet. In addition, many microarray analyses yielded thousands of sequenced EST and cDNA clones. For the researcher interested in single gene analyses (from a phylogenetic, a structural biology or other perspective) it is therefore important to have up-to-date knowledge about the various resources providing primary data. diArk provides comprehensive search modules each with detailed options and three different views of the selected data.
To be up to date with the newest data just use our RSS-Feed on the right side.

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Usage

The web interface has been designed using the next generation internet features (Web 2.0). Thus, the site makes extensive use of Ajax (Asynchronous JavaScript and XML) in order to present the user with a feature rich interface while minimizing the amount of transferred data. To use the database you therefore have to enable javascript and session-cookies.

Note

We have done our best to include all eukaryotic sequencing projects in the world that provide assembled genomic data or a considerable amount of cDNA/EST data. But we are sure that we still miss some. If you are aware of a missing project please contact us.

diArk 3.0 Content Info

Species:6488
References:170
Projects:9057
gen DNA Projects:5222
EST/cDNA Projects:851
Publications:2417
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

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