Welcome to diArk 3.0.

A database for eukaryotic genome and EST sequencing projects.


If you use diArk, please cite:
B. Hammesfahr, F. Odronitz, M. Hellkamp & M. Kollmar (2011) diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data. BMC Research Notes 4, 338. Open Access Highly Accessed

Do you know?

Erythrobasidium yunnanense JCM 10687
Erythrobasidium_yunnanense_JCM_10687 Picture Source
Taxonomy:Eukaryota | Opisthokonta | Fungi | Dikarya | Basidiomycota | Pucciniomycotina | Cystobasidiomycetes | Erythrobasidiales | Erythrobasidiaceae | Erythrobasidium
Synonym:Sporobolomyces yunnanensis
Ncbi Go to NCBI Taxonomy (114840)
Eol Encyclopedia of life
Wiki Wikipedia

Newest Species and Genome Assemblies in diArk

2018-06-25

Ambrosiozyma_philentoma_NRRL_Y_7523
Ambrosiozyma philentoma NRRL Y 7523 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetales incertae sedis | Ambrosiozyma
Coverage: 93 | Contigs: 385 | GC-Content: 35.0% | Bases: 17.7Mbp | Filesize: 17.16MB
Candida_sake_CBA6005
Candida sake CBA6005 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetales incertae sedis | Candida
Contigs: 16 | GC-Content: 38.8% | Bases: 14.1Mbp | Filesize: 13.63MB
Candida_sake_CBA6005
Candida sake CBA6005 v.1.0.0 (mito)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetales incertae sedis | Candida
Contigs: 1 | GC-Content: 26.0% | Bases: 0.0Mbp | Filesize: 0.02MB
Citeromyces_matritensis_NRRL_Y_2407
Citeromyces matritensis NRRL Y 2407 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetaceae | Citeromyces
Coverage: 36 | Contigs: 3451 | GC-Content: 43.3% | Bases: 20.3Mbp | Filesize: 20.01MB
Kazachstania_servazzii_CBA6004
Kazachstania servazzii CBA6004 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetaceae | Kazachstania
Contigs: 36 | GC-Content: 34.4% | Bases: 12.5Mbp | Filesize: 12.09MB
Nakazawaea_wickerhamii_NRRL_Y_2563
Nakazawaea wickerhamii NRRL Y 2563 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Pichiaceae | Nakazawaea
Coverage: 54 | Contigs: 131 | GC-Content: 35.0% | Bases: 10.9Mbp | Filesize: 10.52MB
Peterozyma_xylosa_NRRL_Y_12939
Peterozyma xylosa NRRL Y 12939 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Debaryomycetaceae | Peterozyma
Coverage: 36 | Contigs: 234 | GC-Content: 38.1% | Bases: 13.0Mbp | Filesize: 12.56MB
Saccharomycopsis_capsularis_NRRL_Y_17639
Saccharomycopsis capsularis NRRL Y 17639 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycopsidaceae | Saccharomycopsis
Coverage: 81 | Contigs: 1346 | GC-Content: 44.2% | Bases: 17.8Mbp | Filesize: 17.39MB
Saturnispora_dispora_NRRL_Y_1447
Saturnispora dispora NRRL Y 1447 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Pichiaceae | Saturnispora
Coverage: 45 | Contigs: 474 | GC-Content: 36.7% | Bases: 10.1Mbp | Filesize: 9.82MB
Starmerella_bacillaris_CBS_9494
Starmerella bacillaris CBS 9494 v.1.0.0 (contigs)
Taxonomy: Opisthokonta | Fungi | Dikarya | . . . | Saccharomycetales incertae sedis | Starmerella
Coverage: 122 | Contigs: 200 | GC-Content: 39.5% | Bases: 9.3Mbp | Filesize: 9.01MB

Newest Genome Publications in diArk

Peterozyma_xylosa_NRRL_Y_12939
Saccharomyces_uvarum_U3
Hyaena_hyaena
Chlorella_sorokiniana
Metschnikowia_fructicola_AP47

Purpose of the Database

The number of completed eukaryotic genome sequences and cDNA projects has increased exponentially in the past few years although most of them have not been published yet. In addition, many microarray analyses yielded thousands of sequenced EST and cDNA clones. For the researcher interested in single gene analyses (from a phylogenetic, a structural biology or other perspective) it is therefore important to have up-to-date knowledge about the various resources providing primary data. diArk provides comprehensive search modules each with detailed options and three different views of the selected data.
To be up to date with the newest data just use our RSS-Feed on the right side.

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Usage

The web interface has been designed using the next generation internet features (Web 2.0). Thus, the site makes extensive use of Ajax (Asynchronous JavaScript and XML) in order to present the user with a feature rich interface while minimizing the amount of transferred data. To use the database you therefore have to enable javascript and session-cookies.

Note

We have done our best to include all eukaryotic sequencing projects in the world that provide assembled genomic data or a considerable amount of cDNA/EST data. But we are sure that we still miss some. If you are aware of a missing project please contact us.

diArk 3.0 Content Info

Species:6438
References:170
Projects:9006
gen DNA Projects:5171
EST/cDNA Projects:851
Publications:2405
link to cymobase
link to scipio
link to www.motorprotein.de
MPI for biophysical chemistry

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